HL_4V7P_004

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_004 not in the Motif Atlas

Homologous match to HL_4LFB_003

Geometric discrepancy: 0.1316

The information below is about HL_4LFB_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V7P|1|AA|G|158
4V7P|1|AA|G|159
4V7P|1|AA|A|160
4V7P|1|AA|A|161
4V7P|1|AA|A|162
4V7P|1|AA|C|163

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AT

30S ribosomal protein S20

Chain BP

50S ribosomal protein L19