HL_4V7P_011

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_011 not in the Motif Atlas

Homologous match to HL_4LFB_010

Geometric discrepancy: 0.1674

The information below is about HL_4LFB_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V7P|1|AA|C|379
4V7P|1|AA|G|380
4V7P|1|AA|C|381
4V7P|1|AA|A|382
4V7P|1|AA|A|383
4V7P|1|AA|G|384

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AP

30S ribosomal protein S16