HL_4V7P_013

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGAGGAG

Length

7 nucleotides

Bulged bases

4V7P|1|AA|G|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_013 not in the Motif Atlas

Homologous match to HL_6CZR_083

Geometric discrepancy: 0.2692

The information below is about HL_6CZR_083

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7P|1|AA|C|458
4V7P|1|AA|G|464
4V7P|1|AA|A|465
4V7P|1|AA|G|466
4V7P|1|AA|G|467
4V7P|1|AA|A|468
4V7P|1|AA|G|474

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AP

30S ribosomal protein S16