HL_4V7P_021

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_021 not in the Motif Atlas

Homologous match to HL_6CZR_091

Geometric discrepancy: 0.1141

The information below is about HL_6CZR_091

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V7P|1|AA|C|897
4V7P|1|AA|G|898
4V7P|1|AA|C|899
4V7P|1|AA|A|900
4V7P|1|AA|A|901
4V7P|1|AA|G|902

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA