HL_4V7P_029

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

4V7P|1|AA|C|1267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_029 not in the Motif Atlas

Homologous match to HL_6CZR_099

Geometric discrepancy: 0.21

The information below is about HL_6CZR_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7P|1|AA|G|1265
4V7P|1|AA|G|1266
4V7P|1|AA|C|1267
4V7P|1|AA|A|1268
4V7P|1|AA|A|1269
4V7P|1|AA|C|1270

Current chains

Chain AA

16S rRNA (1504-MER)

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AS

30S ribosomal protein S19

Chain AU

30S ribosomal protein Thx