3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
CUACGG
Length
6 nucleotides
Bulged bases
4V7P|1|AA|A|1451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V7P_032 not in the Motif Atlas
Homologous match to HL_5J7L_030
Geometric discrepancy: 0.2343
The information below is about HL_5J7L_030
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

4V7P|1|AA|C|1449
4V7P|1|AA|U|1450
4V7P|1|AA|A|1451
4V7P|1|AA|C|1452
4V7P|1|AA|G|1453
4V7P|1|AA|G|1454

Current chains

Chain AA
16S rRNA (1504-MER)

Nearby chains

Chain AT
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.217 s