HL_4V7P_034

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

4V7P|1|AW|C|16, 4V7P|1|AW|G|18, 4V7P|1|AW|G|19, 4V7P|1|AW|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_034 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.1933

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7P|1|AW|C|13
4V7P|1|AW|A|14
4V7P|1|AW|G|15
4V7P|1|AW|C|16
4V7P|1|AW|C|17
4V7P|1|AW|U|17|||A
4V7P|1|AW|G|18
4V7P|1|AW|G|19
4V7P|1|AW|U|20
4V7P|1|AW|A|21
4V7P|1|AW|G|22

Current chains

Chain AW

P-site tRNA-fMet

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5