HL_4V7P_041

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CUUUCUUG

Length

8 nucleotides

Bulged bases

4V7P|1|BA|C|163|||B

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_041 not in the Motif Atlas

Homologous match to HL_7A0S_005

Geometric discrepancy: 0.5097

The information below is about HL_7A0S_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V7P|1|BA|C|155
4V7P|1|BA|U|161
4V7P|1|BA|U|162
4V7P|1|BA|U|163
4V7P|1|BA|C|163|||B
4V7P|1|BA|U|164
4V7P|1|BA|U|165
4V7P|1|BA|G|171

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BX

50S ribosomal protein L28