HL_4V7P_042

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V7P|1|BA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_042 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.0846

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V7P|1|BA|G|194
4V7P|1|BA|A|195
4V7P|1|BA|A|196
4V7P|1|BA|A|197
4V7P|1|BA|C|198
4V7P|1|BA|A|199
4V7P|1|BA|U|200
4V7P|1|BA|C|201

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L15

Chain BX

50S ribosomal protein L28