HL_4V7P_104

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_104 not in the Motif Atlas

Geometric match to HL_3AM1_002

Geometric discrepancy: 0.3203

The information below is about HL_3AM1_002

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V7P|1|BA|C|2794
4V7P|1|BA|G|2795
4V7P|1|BA|U|2797
4V7P|1|BA|C|2798
4V7P|1|BA|A|2799
4V7P|1|BA|A|2801
4V7P|1|BA|G|2802

Current chains

Chain BA

23S ribosomal RNA

Nearby chains