HL_4V7P_108

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_108 not in the Motif Atlas

Homologous match to HL_7RQB_071

Geometric discrepancy: 0.2374

The information below is about HL_7RQB_071

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V7P|1|BB|G|86
4V7P|1|BB|G|87
4V7P|1|BB|C|88
4V7P|1|BB|G|89|||A
4V7P|1|BB|A|89|||B
4V7P|1|BB|C|90

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BM

50S ribosomal protein L16

Chain BV

50S ribosomal protein L25