HL_4V7P_128

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_128 not in the Motif Atlas

Homologous match to HL_4WF9_020

Geometric discrepancy: 0.1092

The information below is about HL_4WF9_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V7P|1|CA|G|629
4V7P|1|CA|G|630
4V7P|1|CA|A|631
4V7P|1|CA|A|632
4V7P|1|CA|A|633
4V7P|1|CA|C|634

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L35

Chain CL

50S ribosomal protein L15