HL_4V7P_134

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

4V7P|1|CA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_134 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.5853

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

4V7P|1|CA|C|884
4V7P|1|CA|C|885
4V7P|1|CA|C|886
4V7P|1|CA|A|887
4V7P|1|CA|C|888
4V7P|1|CA|C|889
4V7P|1|CA|A|890
4V7P|1|CA|G|892

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain DM

30S ribosomal protein S13

Chain DS

30S ribosomal protein S19