HL_4V7P_138

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_138 not in the Motif Atlas

Homologous match to HL_7RQB_030

Geometric discrepancy: 0.3879

The information below is about HL_7RQB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7P|1|CA|C|1092
4V7P|1|CA|G|1093
4V7P|1|CA|U|1094
4V7P|1|CA|A|1095
4V7P|1|CA|A|1096
4V7P|1|CA|U|1097
4V7P|1|CA|A|1098
4V7P|1|CA|G|1099

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CG

50S ribosomal protein L6

Chain DV

Peptide chain release factor 1