HL_4V7P_158

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4V7P|1|CA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_158 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0696

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4V7P|1|CA|G|1949
4V7P|1|CA|G|1950
4V7P|1|CA|U|1951
4V7P|1|CA|A|1952
4V7P|1|CA|A|1953
4V7P|1|CA|G|1954
4V7P|1|CA|U|1955
4V7P|1|CA|U|1956
4V7P|1|CA|C|1957

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CK

50S ribosomal protein L14

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DV

Peptide chain release factor 1