HL_4V7P_188

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_188 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.1334

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V7P|1|DA|U|296
4V7P|1|DA|G|297
4V7P|1|DA|A|298
4V7P|1|DA|G|299
4V7P|1|DA|A|300
4V7P|1|DA|G|301

Current chains

Chain DA

16S rRNA (1504-MER)

Nearby chains

Chain DD

30S ribosomal protein S4

Chain DE

30S ribosomal protein S5

Chain DL

30S ribosomal protein S12

Chain DQ

30S ribosomal protein S17