HL_4V7P_212

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V7P|1|DA|A|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_212 not in the Motif Atlas

Homologous match to HL_5J7L_030

Geometric discrepancy: 0.2345

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V7P|1|DA|C|1449
4V7P|1|DA|U|1450
4V7P|1|DA|A|1451
4V7P|1|DA|C|1452
4V7P|1|DA|G|1453
4V7P|1|DA|G|1454

Current chains

Chain DA

16S rRNA (1504-MER)

Nearby chains

Chain DT

30S ribosomal protein S20