HL_4V7P_220

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

GGGAACAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7P_220 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2386

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V7P|1|BA|G|977
4V7P|1|BA|G|978
4V7P|1|BA|G|979
4V7P|1|BA|A|980
4V7P|1|BA|A|981
4V7P|1|BA|C|982
4V7P|1|BA|A|983
4V7P|1|BA|A|984
4V7P|1|BA|C|985
4V7P|1|BA|C|986

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BQ

50S ribosomal protein L20

Chain BZ

50S ribosomal protein L30