HL_4V7U_216

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUCGCAAGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7U_216 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3234

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V7U|1|CA|G|184
4V7U|1|CA|U|185
4V7U|1|CA|C|186
4V7U|1|CA|G|187
4V7U|1|CA|C|188
4V7U|1|CA|A|189
4V7U|1|CA|A|190
4V7U|1|CA|G|191
4V7U|1|CA|A|192
4V7U|1|CA|C|193

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20