HL_4V7U_218

3D structure

PDB id

4V7U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUUUAGGU

Length

8 nucleotides

Bulged bases

4V7U|1|DA|U|827, 4V7U|1|DA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7U_218 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2856

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V7U|1|DA|A|825
4V7U|1|DA|U|826
4V7U|1|DA|U|827
4V7U|1|DA|U|828
4V7U|1|DA|A|829
4V7U|1|DA|G|830
4V7U|1|DA|G|831
4V7U|1|DA|U|832

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DL

50S ribosomal protein L15

Chain DW

50S ribosomal protein L27