HL_4V7V_045

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4V7V|1|BA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7V_045 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0783

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V7V|1|BA|G|410
4V7V|1|BA|G|411
4V7V|1|BA|A|412
4V7V|1|BA|C|413
4V7V|1|BA|C|414
4V7V|1|BA|A|415
4V7V|1|BA|U|416
4V7V|1|BA|C|417

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BL

50S ribosomal protein L15