HL_4V7V_069

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GGCAAAUCC

Length

9 nucleotides

Bulged bases

4V7V|1|BA|C|1493, 4V7V|1|BA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7V_069 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3806

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V7V|1|BA|G|1491
4V7V|1|BA|G|1492
4V7V|1|BA|C|1493
4V7V|1|BA|A|1494
4V7V|1|BA|A|1495
4V7V|1|BA|A|1496
4V7V|1|BA|U|1497
4V7V|1|BA|C|1498
4V7V|1|BA|C|1499

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2