HL_4V7V_126

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V7V|1|CA|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7V_126 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.2002

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

4V7V|1|CA|C|1028
4V7V|1|CA|U|1029
4V7V|1|CA|U|1030
4V7V|1|CA|C|1031
4V7V|1|CA|G|1032
4V7V|1|CA|G|1033

Current chains

Chain CA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7