HL_4V7X_218

3D structure

PDB id

4V7X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4V7X|1|CA|U|839, 4V7X|1|CA|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7X_218 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3423

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V7X|1|CA|G|837
4V7X|1|CA|G|838
4V7X|1|CA|U|839
4V7X|1|CA|C|840
4V7X|1|CA|U|841
4V7X|1|CA|C|848
4V7X|1|CA|C|849

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CB

30S ribosomal protein S2

Chain CR

30S ribosomal protein S18