HL_4V7Y_061

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCGAAGACAGCCAGUCGAGUG

Length

22 nucleotides

Bulged bases

4V7Y|1|BA|A|1045, 4V7Y|1|BA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7Y_061 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3019

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V7Y|1|BA|C|1041
4V7Y|1|BA|G|1042
4V7Y|1|BA|C|1043
4V7Y|1|BA|G|1044
4V7Y|1|BA|A|1045
4V7Y|1|BA|A|1046
4V7Y|1|BA|G|1047
4V7Y|1|BA|A|1048
4V7Y|1|BA|C|1049
4V7Y|1|BA|A|1050
4V7Y|1|BA|G|1051
4V7Y|1|BA|C|1052
4V7Y|1|BA|C|1053
4V7Y|1|BA|A|1106
4V7Y|1|BA|G|1107
4V7Y|1|BA|U|1108
4V7Y|1|BA|C|1109
4V7Y|1|BA|G|1110
4V7Y|1|BA|A|1111
4V7Y|1|BA|G|1112
4V7Y|1|BA|U|1113
4V7Y|1|BA|G|1114

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L6

Chain BZ

50S ribosomal protein L25