HL_4V7Y_172

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAGCCCGCAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7Y_172 not in the Motif Atlas

Homologous match to HL_7A0S_038

Geometric discrepancy: 0.4519

The information below is about HL_7A0S_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7Y|1|DA|G|1526
4V7Y|1|DA|G|1527
4V7Y|1|DA|A|1528
4V7Y|1|DA|A|1528|||A
4V7Y|1|DA|G|1529
4V7Y|1|DA|C|1530
4V7Y|1|DA|C|1531
4V7Y|1|DA|C|1532
4V7Y|1|DA|G|1533
4V7Y|1|DA|C|1543
4V7Y|1|DA|A|1544
4V7Y|1|DA|A|1545
4V7Y|1|DA|C|1546

Current chains

Chain DA

23S ribosomal RNA

Nearby chains