HL_4V7Y_192

3D structure

PDB id

4V7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4V7Y|1|DA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V7Y_192 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0803

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4V7Y|1|DA|C|2404
4V7Y|1|DA|G|2405
4V7Y|1|DA|U|2406
4V7Y|1|DA|G|2407
4V7Y|1|DA|U|2408
4V7Y|1|DA|G|2409
4V7Y|1|DA|G|2410
4V7Y|1|DA|A|2411
4V7Y|1|DA|A|2412
4V7Y|1|DA|G|2413

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DP

50S ribosomal protein L15