HL_4V80_048

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4V80|1|BA|U|545, 4V80|1|BA|U|546, 4V80|1|BA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V80_048 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2905

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V80|1|BA|G|543
4V80|1|BA|C|544
4V80|1|BA|U|545
4V80|1|BA|U|546
4V80|1|BA|A|547
4V80|1|BA|G|548
4V80|1|BA|G|549
4V80|1|BA|C|550

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BR

50S ribosomal protein L21