HL_4V80_085

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V80|1|BA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V80_085 not in the Motif Atlas

Geometric match to HL_4WF9_049

Geometric discrepancy: 0.077

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

4V80|1|BA|C|2248
4V80|1|BA|U|2249
4V80|1|BA|G|2250
4V80|1|BA|G|2251
4V80|1|BA|G|2252
4V80|1|BA|G|2253
4V80|1|BA|C|2254
4V80|1|BA|G|2255
4V80|1|BA|G|2256

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27