HL_4V80_087

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V80_087 not in the Motif Atlas

Geometric match to HL_7RQB_055

Geometric discrepancy: 0.1473

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V80|1|BA|G|2303
4V80|1|BA|G|2304
4V80|1|BA|U|2305
4V80|1|BA|C|2306
4V80|1|BA|G|2307
4V80|1|BA|G|2308
4V80|1|BA|A|2309
4V80|1|BA|C|2310
4V80|1|BA|A|2311
4V80|1|BA|U|2312
4V80|1|BA|C|2313

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BF

50S ribosomal protein L5