HL_4V80_124

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

4V80|1|CA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V80_124 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1969

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V80|1|CA|G|963
4V80|1|CA|A|964
4V80|1|CA|U|965
4V80|1|CA|G|966
4V80|1|CA|C|967
4V80|1|CA|A|968
4V80|1|CA|A|969
4V80|1|CA|C|970
4V80|1|CA|G|971
4V80|1|CA|C|972

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10

Chain CM

30S ribosomal protein S13