HL_4V80_153

3D structure

PDB id

4V80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to CEM-101.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

4V80|1|DA|A|613, 4V80|1|DA|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V80_153 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2607

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V80|1|DA|C|611
4V80|1|DA|G|612
4V80|1|DA|A|613
4V80|1|DA|A|614
4V80|1|DA|U|615
4V80|1|DA|A|616
4V80|1|DA|G|617

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4