HL_4V83_005

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

4V83|1|AA|U|189, 4V83|1|AA|G|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_005 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.1337

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4V83|1|AA|C|186|||G
4V83|1|AA|C|187
4V83|1|AA|U|188
4V83|1|AA|U|189
4V83|1|AA|G|190
4V83|1|AA|G|191|||A

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20