HL_4V83_048

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

4V83|1|BA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_048 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1158

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

4V83|1|BA|G|410
4V83|1|BA|G|411
4V83|1|BA|A|412
4V83|1|BA|C|413
4V83|1|BA|C|414
4V83|1|BA|A|415
4V83|1|BA|C|416
4V83|1|BA|C|417

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L15