HL_4V83_144

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUUCUUG

Length

8 nucleotides

Bulged bases

4V83|1|DA|C|163|||B

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_144 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.206

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V83|1|DA|C|155
4V83|1|DA|U|161
4V83|1|DA|U|162
4V83|1|DA|U|163
4V83|1|DA|C|163|||B
4V83|1|DA|U|164
4V83|1|DA|U|165
4V83|1|DA|G|171

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DX

50S ribosomal protein L28