HL_4V83_175

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAUGGACGAG

Length

11 nucleotides

Bulged bases

4V83|1|DA|U|1454, 4V83|1|DA|A|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_175 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.4804

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V83|1|DA|C|1450
4V83|1|DA|C|1451
4V83|1|DA|A|1453
4V83|1|DA|U|1454
4V83|1|DA|G|1455
4V83|1|DA|G|1456
4V83|1|DA|A|1457
4V83|1|DA|C|1458
4V83|1|DA|G|1459
4V83|1|DA|A|1460
4V83|1|DA|G|1461

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DN

50S ribosomal protein L17