HL_4V83_222

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UUCGUGGAG

Length

9 nucleotides

Bulged bases

4V83|1|DA|G|386, 4V83|1|DA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V83|1|DA|U|383
4V83|1|DA|U|384
4V83|1|DA|C|385
4V83|1|DA|G|386
4V83|1|DA|U|387
4V83|1|DA|G|388
4V83|1|DA|G|389
4V83|1|DA|A|390
4V83|1|DA|G|391

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DL

50S ribosomal protein L15

Chain DX

50S ribosomal protein L28