HL_4V83_223

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUUAGGG

Length

8 nucleotides

Bulged bases

4V83|1|DA|U|827, 4V83|1|DA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V83_223 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3363

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V83|1|DA|C|825
4V83|1|DA|U|826
4V83|1|DA|U|827
4V83|1|DA|U|828
4V83|1|DA|A|829
4V83|1|DA|G|830
4V83|1|DA|G|831
4V83|1|DA|G|832

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DL

50S ribosomal protein L15

Chain DW

50S ribosomal protein L27