HL_4V84_010

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4V84|1|AA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_010 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.131

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V84|1|AA|C|342
4V84|1|AA|U|343
4V84|1|AA|A|344
4V84|1|AA|C|345
4V84|1|AA|G|346
4V84|1|AA|G|347

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain BK

50S ribosomal protein L14

Chain BP

50S ribosomal protein L19