HL_4V84_064

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

4V84|1|BA|A|1174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_064 not in the Motif Atlas

Geometric match to HL_7A0S_061

Geometric discrepancy: 0.3895

The information below is about HL_7A0S_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V84|1|BA|G|1171
4V84|1|BA|G|1173
4V84|1|BA|A|1174
4V84|1|BA|U|1175
4V84|1|BA|G|1176
4V84|1|BA|A|1177
4V84|1|BA|C|1178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains