HL_4V84_069

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4V84|1|BA|U|1396, 4V84|1|BA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_069 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1219

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V84|1|BA|G|1389
4V84|1|BA|U|1390
4V84|1|BA|U|1391
4V84|1|BA|A|1392
4V84|1|BA|A|1393
4V84|1|BA|U|1394
4V84|1|BA|A|1395
4V84|1|BA|U|1396
4V84|1|BA|U|1397
4V84|1|BA|C|1398

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BT

50S ribosomal protein L23