HL_4V84_125

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_125 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.094

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V84|1|CA|C|897
4V84|1|CA|G|898
4V84|1|CA|C|899
4V84|1|CA|A|900
4V84|1|CA|A|901
4V84|1|CA|G|902

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CQ

30S ribosomal protein S17

Chain DA

Large subunit ribosomal RNA; LSU rRNA