HL_4V84_134

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_134 not in the Motif Atlas

Geometric match to HL_4LFB_029

Geometric discrepancy: 0.1699

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V84|1|CA|C|1314
4V84|1|CA|U|1315
4V84|1|CA|G|1316
4V84|1|CA|C|1317
4V84|1|CA|A|1318
4V84|1|CA|A|1319
4V84|1|CA|C|1320
4V84|1|CA|C|1321
4V84|1|CA|C|1322
4V84|1|CA|G|1323

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CN

30S ribosomal protein S14 type Z

Chain CS

30S ribosomal protein S19