HL_4V84_135

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAUCAGAUGCG*C

Length

12 nucleotides

Bulged bases

4V84|1|CA|U|1364

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|CA|G|1356
4V84|1|CA|A|1357
4V84|1|CA|U|1358
4V84|1|CA|C|1359
4V84|1|CA|A|1360
4V84|1|CA|G|1361
4V84|1|CA|A|1363
4V84|1|CA|U|1364
4V84|1|CA|G|1365
4V84|1|CA|C|1366
4V84|1|CA|G|1365
*
4V84|1|CA|C|1366

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14 type Z

Chain CU

30S ribosomal protein Thx