HL_4V84_143

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUUCUUG

Length

8 nucleotides

Bulged bases

4V84|1|DA|U|162, 4V84|1|DA|C|163|||B

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_143 not in the Motif Atlas

Homologous match to HL_7A0S_005

Geometric discrepancy: 0.4804

The information below is about HL_7A0S_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V84|1|DA|C|155
4V84|1|DA|U|161
4V84|1|DA|U|162
4V84|1|DA|U|163
4V84|1|DA|C|163|||B
4V84|1|DA|U|164
4V84|1|DA|U|165
4V84|1|DA|G|171

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DX

50S ribosomal protein L28