HL_4V84_164

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCCACCAG

Length

8 nucleotides

Bulged bases

4V84|1|DA|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_164 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3189

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V84|1|DA|C|884
4V84|1|DA|C|885
4V84|1|DA|C|886
4V84|1|DA|A|887
4V84|1|DA|C|888
4V84|1|DA|C|889
4V84|1|DA|A|890
4V84|1|DA|G|892

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CS

30S ribosomal protein S19