HL_4V84_169

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_169 not in the Motif Atlas

Geometric match to HL_4WFL_003

Geometric discrepancy: 0.0956

The information below is about HL_4WFL_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V84|1|DA|C|1222
4V84|1|DA|G|1223
4V84|1|DA|C|1224
4V84|1|DA|G|1225
4V84|1|DA|A|1226
4V84|1|DA|G|1227

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DQ

50S ribosomal protein L20

Chain DR

50S ribosomal protein L21