HL_4V84_173
3D structure
- PDB id
- 4V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GUUAAUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 4V84|1|DA|U|1396, 4V84|1|DA|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V84_173 not in the Motif Atlas
- Homologous match to HL_5J7L_168
- Geometric discrepancy: 0.1234
- The information below is about HL_5J7L_168
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81545.2
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V84|1|DA|G|1389
4V84|1|DA|U|1390
4V84|1|DA|U|1391
4V84|1|DA|A|1392
4V84|1|DA|A|1393
4V84|1|DA|U|1394
4V84|1|DA|A|1395
4V84|1|DA|U|1396
4V84|1|DA|U|1397
4V84|1|DA|C|1398
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain DT
- 50S ribosomal protein L23
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