HL_4V84_226

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4V84|1|CA|U|421, 4V84|1|CA|C|422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_226 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2699

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V84|1|CA|C|418
4V84|1|CA|C|419
4V84|1|CA|U|420
4V84|1|CA|U|421
4V84|1|CA|C|422
4V84|1|CA|G|423
4V84|1|CA|G|424
4V84|1|CA|G|425

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CD

30S ribosomal protein S4