HL_4V84_230

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

4V84|1|DA|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V84_230 not in the Motif Atlas

Homologous match to HL_9DFE_039

Geometric discrepancy: 0.101

The information below is about HL_9DFE_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V84|1|DA|C|163|||B
4V84|1|DA|A|1631
4V84|1|DA|A|1632
4V84|1|DA|G|1633
4V84|1|DA|A|1634
4V84|1|DA|G|1635

Current chains

Chain DA

23S ribosomal RNA

Nearby chains